Both high- and low-copy-number plasmids commonly solve this problem by using site-specific recombination to resolve dimers to monomers (see Fig. 4). This process involves site-specific recombinases that bind to specific recombination sites on both monomer copies within the plasmid dimer and form a synaptic complex in which the two recombination sites are brought in to close proximity (55). The site-specific recombinases cleave DNA strands within this complex and promote strand exchange between the two sites and results in the monomerization of the plasmid dimer. The XerC and XerD site-specific recombinases encoded by most bacterial chromosomes are involved in the resolution of dimeric forms of many plasmids, including the ColE1 plasmid, and bacterial chromosomes (56).


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